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Topic: How to calculate the net charge of a peptide  (Read 4199 times)

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Offline ForTomorrow

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How to calculate the net charge of a peptide
« on: June 14, 2017, 12:24:14 PM »
I need help calculating the net charge on oxytocin at pH 2.0 and at pH 8.5. I know that involves calculating the isoelectric points of the individual residues at the given pH. Oxytocin is a nonapeptide of the following sequence:

Cys - Phe - Ile - Glu - Asn - Cys - Pro - His - Gly - NH2

Both cysteine amino acids are bound together by disulfide bonds.

Can someone help?

Offline Babcock_Hall

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Re: How to calculate the net charge of a peptide
« Reply #1 on: June 14, 2017, 02:37:28 PM »
I need help calculating the net charge on oxytocin at pH 2.0 and at pH 8.5. I know that involves calculating the isoelectric points of the individual residues at the given pH.
An isoelectric point does not change with pH; the isoelectric point is the pH at which there is no net charge, but what you wrote above makes it sound as if the isoelectric point changes with pH.

Offline Yggdrasil

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Re: How to calculate the net charge of a peptide
« Reply #2 on: June 14, 2017, 08:05:17 PM »
Step 1: Identify all the ionizable groups in the peptide (don't forget the N- and C-termini) (though in this case the C-terminus is modified to remove the ionizable group)
Step 2: Determine the pKa of the ionizable groups
Step 3: Based on the pKa, figure out the charge of each group at pH 2.0 and pH 8.5
Step 4: Sum the charges of each group to find the overall net charge

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