At this point, you have rinsed your column with the mobile phase, then followed by an isopropanol rinse and yet the problem persists as a transiently fluctuating drop in column Pressure. To my limited knowledge, this reprsents a problem with permeability of the packing bed material towards the mobile phase while it perfuses in the column bed. Pls try this: 1) reverse the orientation of your column so that the "flow direction arrows" are pointing towards the INjector, then and rinse first with methanol:water. 10 minutes @ 2 mL min-1 should suffice; so that the "flow direction arrows" are pointing towards the Detector, then rinse with 100% methanol for same timeXrate. 2) Re-reverse your column and put in proper orientation, then pump through your mobile phase. This ought to deactivate the diol residues in the column packing bed and fix the problem?