Consumed means the amount of reactant that reacts relative to the total amount present. If, in your case, the bacteria contain a small equilibrium amount of ammonium, they will be unable to process any amount of ammonium beyond that equilibrium.
For your second problem, first write down a balanced reaction equation. From that, calculate the theoretical yield (first in grams, then in moles), and combine the result with the reaction equation to find the amount of fluorine you need. Remember that you don't add 83.5% of fluorine to the reaction mixture, but 100%.