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Chemistry Forums for Students => Organic Chemistry Forum => Topic started by: rita87 on March 01, 2009, 08:02:00 PM

Title: synthesis of dinitrile (mechanism)
Post by: rita87 on March 01, 2009, 08:02:00 PM
Hi ,
can anyone help me with the mechanism (with curly arrows)for the following reactions. I know there are many different steps and that's a long question, but i really dont know how it works,couldn't find any usefull sources.
Thank you guys

P.S. this can be found in"Two-directional synthesis. Part 1: A short formal synthesis of (±)-histrionicotoxin and (±)-histrionicotoxin 235A "Tetrahedron Letters ,Volume 41, Issue 47, 18 November 2000, Pages 9163-9165

(http://)
Title: Re: synthesis of dinitrile (mechanism)
Post by: azmanam on March 01, 2009, 08:23:47 PM
cool sequence. 

3->5, 6->7 are both in the acetal mechanism (the lewis acid changes, but the mechanism doesn't). 

5->6 is a variation of the aldol.

7->8 starts with a variation of imine formation, then joins 8->9 as a variation of a Michael addition.

Lots of variations of common reactions... but fortunately the mechanisms are all the same as the common reactions.
Title: Re: synthesis of dinitrile (mechanism)
Post by: rita87 on March 02, 2009, 03:11:59 PM
3->5 :I know the mechanism for a normal hydrolysis(HCl in this case) of acetal,but i dont know how it works for the ring.I also don't know what THF does in this mechanism.

Thanks
Title: Re: synthesis of dinitrile (mechanism)
Post by: azmanam on March 02, 2009, 03:38:45 PM
THF is solvent only.  Tetrahydrofuran.

Cyclic acetals operate exactly the same as 'typical-looking' acetals.  Whether the alcohols come from two molecules of methanol or one molecule of ethylene glycol... the mechanism - forward and backward - is exactly the same.
Title: Re: synthesis of dinitrile (mechanism)
Post by: rita87 on March 02, 2009, 04:01:08 PM
so is this mechanism correct( I skipped 2-3 steps)
Thanks
 
Title: Re: synthesis of dinitrile (mechanism)
Post by: azmanam on March 02, 2009, 04:09:50 PM
step 1 is good.  not sure how you got to step 2, but a) you switched from ethylene glycol to methanol, and (with the carbon chain and proton also on R) carbon has 5 bonds.  intermediate 4 is back on track, do you know how to get from int 5->pdt?
Title: Re: synthesis of dinitrile (mechanism)
Post by: rita87 on March 02, 2009, 04:30:34 PM
I am not sure if the ring breaks into OMe-R-OMe or O-R-OCH2CH3 .
yes, you are right, C should have 4 bonds it should be R=O-Me.
Title: Re: synthesis of dinitrile (mechanism)
Post by: azmanam on March 02, 2009, 04:38:02 PM
products will be ethylene glycol (2 eqiv) and your dialdehyde.

I've redrawn the steps in your mech with what the structures should look like.  Can you push the arrows to get through the mech?
Title: Re: synthesis of dinitrile (mechanism)
Post by: rita87 on March 02, 2009, 05:00:42 PM
Thanks mazman , yes i know how to draw the arrows.
the only thing i still dont get is that according to the normal mechanism(not cyclic),there should be ROH loss in step 2 . is that different in the cyclic form?
Title: Re: synthesis of dinitrile (mechanism)
Post by: azmanam on March 02, 2009, 05:26:27 PM
no different.  the R in ROH is just a longer, more complex, carbon chain that's still attached to the molecule.  The cyclic acetal is a common protecting group for aldehydes and ketones.  It makes the carbonyl carbon no longer electrophilic.
Title: Re: synthesis of dinitrile (mechanism)
Post by: rita87 on March 02, 2009, 05:51:50 PM
do you know why ROH stays attached to the molecule, and not lost as in the non cyclic form?
Title: Re: synthesis of dinitrile (mechanism)
Post by: azmanam on March 02, 2009, 07:30:34 PM
It doesn't.  That's the whole point.  There's no difference in the mechanism.  The only thing that changes is the carbon chain on the oxygen units.  One decomposes to give 2 mono alcohols.  One decomposes to give one diol.  See spiroketals for another variation for which the mechanism also doesn't change.  Those decompose to give one ketodiol.
Title: Re: synthesis of dinitrile (mechanism)
Post by: rita87 on March 02, 2009, 08:05:00 PM
thank you sooo much azmanam, you are always a gr8 help. thanks :)
Title: Re: synthesis of dinitrile (mechanism)
Post by: rita87 on March 03, 2009, 06:26:20 PM
for 5-> 6 i am using peterson olefination, but i am very confused with different stereoisomers , please can you explain how it works in this case.
I know that depending on acid or base used,elimination will be syn or anti, but dont know if it also effects stereoisomers formed etc.
I am very confused
thanks
Title: Re: synthesis of dinitrile (mechanism)
Post by: azmanam on March 04, 2009, 01:43:26 PM
Start here:

http://www.organic-chemistry.org/namedreactions/peterson-olefination.shtm
Title: Re: synthesis of dinitrile (mechanism)
Post by: rita87 on March 04, 2009, 05:38:46 PM
Thanks, the link was helpful.

Now i am trying to do 6-> 7 . i know it is hydrolysis and similar to acetal hydrolysis before  but the reagents are confusing i don't know which one is the acid, and why we have 3 reagents, and how to use them all.
please can you help me.

many thanks
Title: Re: synthesis of dinitrile (mechanism)
Post by: azmanam on March 04, 2009, 05:41:52 PM
i don't either.  acetonitrile and water are solvents, for sure.

Silver's the lewis acid... NCS a scavenger for sulfur?  I don't know what NCS does.
Title: Re: synthesis of dinitrile (mechanism)
Post by: rita87 on March 04, 2009, 06:37:50 PM
I found this mechanism in a paper, does this look correct to u. can i use NCS instead of  MNO2 and AgNO3 instead of AlCl3?
Title: Re: synthesis of dinitrile (mechanism)
Post by: cundi on March 05, 2009, 02:20:25 AM
The step 8  :rarrow: 9 is a [3+2] cycloaddition (between a nitrone and "poor electron olefin")
Title: Re: synthesis of dinitrile (mechanism)
Post by: robert_l on March 05, 2009, 07:01:46 AM
cool sequence. 

3->5, 6->7 are both in the acetal mechanism (the lewis acid changes, but the mechanism doesn't). 

5->6 is a variation of the aldol.

7->8 starts with a variation of imine formation, then joins 8->9 as a variation of a Michael addition.

Lots of variations of common reactions... but fortunately the mechanisms are all the same as the common reactions.

I don't understand 5-6.
Title: Re: synthesis of dinitrile (mechanism)
Post by: cundi on March 05, 2009, 08:56:25 AM
Generation of Me3SiCH(Li)CN. Attack to aldehydes. Pettersons-type olefination.
Title: Re: synthesis of dinitrile (mechanism)
Post by: rita87 on March 05, 2009, 09:01:01 AM
The step 8  :rarrow: 9 is a [3+2] cycloaddition (between a nitrone and "poor electron olefin")

thanks you, do you have any idea about the regioselectivity in this reaction.
Title: Re: synthesis of dinitrile (mechanism)
Post by: robert_l on March 05, 2009, 09:15:16 AM
r u workig from a textbook? if so, which one?

thanks
Title: Re: synthesis of dinitrile (mechanism)
Post by: azmanam on March 05, 2009, 04:33:26 PM
Quote
Now i am trying to do 6-> 7 . i know it is hydrolysis and similar to acetal hydrolysis before  but the reagents are confusing i don't know which one is the acid, and why we have 3 reagents, and how to use them all.
please can you help me.

Here's the original reference (subscription needed):  http://dx.doi.org/10.1021/jo00822a019

The NCS does indeed 'sequester' the sulfur, so to speak, so that it drives the reaction to the right.  In this case, sulfur reagents can be oxidized to a variety of sulfur oxidation states by chlorine.

Even more original reference (subscription needed):  http://dx.doi.org/10.1021/jo01208a001
Title: Re: synthesis of dinitrile (mechanism)
Post by: rita87 on March 05, 2009, 06:05:52 PM

in the last stage , 8-> 9 i am not sure if this reaction happens in a single step or 2 steps are required. if 2 steps,do you know iwhich bond forms first, O-C or C-C ?

many thanks
Title: Re: synthesis of dinitrile (mechanism)
Post by: azmanam on March 05, 2009, 08:57:38 PM
I thought it was 2 steps in my first post, but cundi set me straight.  It's a cycloaddition, a pericyclic reaction.  It's concerted.
Title: Re: synthesis of dinitrile (mechanism)
Post by: rita87 on March 06, 2009, 10:31:22 AM
Quote
Now i am trying to do 6-> 7 . i know it is hydrolysis and similar to acetal hydrolysis before  but the reagents are confusing i don't know which one is the acid, and why we have 3 reagents, and how to use them all.
please can you help me.

Here's the original reference (subscription needed):  http://dx.doi.org/10.1021/jo00822a019

The NCS does indeed 'sequester' the sulfur, so to speak, so that it drives the reaction to the right.  In this case, sulfur reagents can be oxidized to a variety of sulfur oxidation states by chlorine.

Even more original reference (subscription needed):  http://dx.doi.org/10.1021/jo01208a001

OMG, I read the references, thank you but it confused me even more. i don't get this at all, the mechanisms in them are different from what i have.
please could you explain this abit more.

Thank you
Title: Re: synthesis of dinitrile (mechanism)
Post by: azmanam on March 06, 2009, 11:10:09 AM
mmm.... no.  no, I cant...  I don't follow the mechanisms so much either.

What I think is important, as far as this question is concerned, is that you can use silver nitrate and water to deprotect a dithiane to give the desired ketone.  The NCS is an additive to react with the sulfur chemoselectively to transform the mercaptan to something that can no longer participate in the reverse reaction (thus driving the reaction to completion).  Often, mercury is used for sulfur sequestration purposes, but not so much anymore for obvious reasons.  It seems that sulfoxides and sufonyl chlorides are the main product of these oxidations, but would likely be hydrolyzed on workup.  The mechanism is probably radical in nature and probably not well understood.

What I would take away from it is an unusual set of conditions for the deprotection of a dithiane.  The mechanism, as far as I'm concerned, can be drawn the exact same way as typical acid-catalyzed deprotection of an acetal, but with sulfur instead of oxygen and silver instead of a proton.  If this is for a class, you should check with your prof.
Title: Re: synthesis of dinitrile (mechanism)
Post by: rita87 on March 06, 2009, 05:13:27 PM
No this is an assignment and my prof doesn't help me .
I've drawn a normal hydrolysis reaction but not sure if the Oxygen atom of AgNO3 attacks carbanion?
Thanks
Title: Re: synthesis of dinitrile (mechanism)
Post by: azmanam on March 07, 2009, 08:45:09 AM
No.  There's water in the reaction system.  Ag+ is just a lewis acid (like the proton is a lewis acid), and water is the nucleophile just like in the 'typical' acetal deprotection.
Title: Re: synthesis of dinitrile (mechanism)
Post by: rita87 on March 18, 2009, 06:07:01 PM
Hi ,
please can you help me with the mechanism for 7 -> 8, i know it is an oxime formation but i am not sure how to use NH2OH. Hcl and NaOAc in this mechanism.

Thanks,
Title: Re: synthesis of dinitrile (mechanism)
Post by: rita87 on March 18, 2009, 06:26:04 PM
btw I know how to do the secont part which is michael addition,but not sure about the first part.

Thank you,
Title: Re: synthesis of dinitrile (mechanism)
Post by: rita87 on March 18, 2009, 09:22:16 PM
well, this is what i have done sofar, but don't know if its correct.

(http://)
Title: Re: synthesis of dinitrile (mechanism)
Post by: macman104 on March 18, 2009, 09:44:55 PM
You are pretty much correct.  Here's a very nice tutorial diagram on oxime formation, and you can even click the second link I've provided and it'll walk you through each step of the process.

http://www.cf.edu/departments/instruction/las/science/chemistry/mechanisms/oxime-mechanism.htm
http://www.cf.edu/departments/instruction/las/science/chemistry/mechanisms/oxime-tut-1.htm

There's this really weird, kinda annoying music playing along too!
Title: Re: synthesis of dinitrile (mechanism)
Post by: rita87 on March 19, 2009, 03:39:50 AM
Thanks macman,
 I used the same website to draw my mechanism, but i don't know how NAOAc is converted to CH3COOH.
Title: Re: synthesis of dinitrile (mechanism)
Post by: macman104 on March 19, 2009, 04:12:54 AM
NaOAc is the sodium salt of acetic acid.  OAc an abbreviation for Acetate, which is the conjugate base of CH3COOH.
Title: Re: synthesis of dinitrile (mechanism)
Post by: rita87 on March 19, 2009, 04:18:44 AM
Thank you so much macman. :)
Title: Re: synthesis of dinitrile (mechanism)
Post by: rita87 on March 22, 2009, 02:18:21 PM
The question doesn't say anything about the presence of Water in 3->5 , is that possible that THF plays the role of Water here?
Title: Re: synthesis of dinitrile (mechanism)
Post by: rita87 on March 22, 2009, 02:51:46 PM
I've tried to draw it using THF as nucleophile but I don't know how to do it as it doesn't have H attached to O.
Can someone help me please.
Thanks
Title: Re: synthesis of dinitrile (mechanism)
Post by: azmanam on March 22, 2009, 03:17:32 PM
2M HCl is assumed to be in water, unless otherwise specified.
Title: Re: synthesis of dinitrile (mechanism)
Post by: rita87 on March 22, 2009, 03:27:08 PM
oooohhhhh, that's right. Thank you sooooo much