Chemical Forums
Chemistry Forums for Students => Organic Chemistry Forum => Organic Chemistry Forum for Graduate Students and Professionals => Topic started by: Babcock_Hall on April 16, 2022, 11:32:22 AM
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We have a BOC-protected amino acid, in which the carboxylic acid is in the form of an active ester with N-hydroxysuccinimide. We wish to couple to a free amine, in which the C-terminus is protected as the tertiary-butyl ester. We have been searching the literature for conditions. We found about 30 reactions via SciFinder, plus one other from a previous search, of which most were in the patent literature. DMF shows up a good deal as the solvent, but I have also seen THF and DCM. The biggest puzzle is the presence and the amount of tertiary amine base which is present more often than not (triethylamine, DIPEA, or N-methylmorpholine being employed in most instances). In some instances, the amine was used as a hydrochloride or hydrobromide salt, but this is not stated clearly in every example. In one instance in which the hydrobromide salt was used, there was a 4.67 mole excess of TEA present. There might have been traces of acetic acid left in this particular example, but I am not sure.
My main question is whether or not we should include a tertiary amine base. A nonnucleophilic base would be unlikely to do harm, but I am not sure if will do any good (unless we have some acid as an impurity. My second question is the choice of solvent. I am inclined to go with DMF but am open to other ideas. I may try a search with slightly more relaxed criteria later. Thanks for any ideas.
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I am still going through reaction conditions from the literature. Most examples use a hydrochloride salt of the amine. Perhaps the reason for excess base is to pull the deprotonation toward completion. Right now I am leaning toward not using any additional base, using DMF as the solvent, and working up with several 5% LiCl washes, followed by a brine wash. The aqueous washes should remove DMF and also remove the N-hydroxysuccinimide by-product.
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I have been advised to add 2-3 equivalents of base. It has also been suggested to use 0.5 M HCl followed by saturated sodium bicarbonate as part of the work-up. The idea is to remove unreacted starting materials.
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I have never added base. The leaving group is not acidic so it seems non important?
I would try just mix the reactants, it should be straightforward. If they use DMF its probably for solubility reasons, you can use any anhydrous solvent.
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I did this reaction few days ago: I used excess of OSu ester and triethylamine. Worked wonders, full conversion. I did thos reaction in the past as well and seems they are somehow worse without base.
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Kriggy,
How much excess? I have seen a slight excess of one or the other reagent, but I need to double-check this.
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Someone at ChemPros (Reddit) noted a slight increase in yield in the presence of base. We will use a little. Right now I plan to model our synthesis after:
https://pubs.acs.org/doi/pdf/10.1021/acs.joc.0c01852
We will substitute in a 5% citric acid wash for the 1 N HCl wash, which is essentially wildfyr's suggestion. My estimate and a quick search in Ford and Moore's indispensable book suggests that the pH should be near 2 for citric acid. Acetic acid at 1 M would be another choice.