What don't these large polymers show up? Are they never visible, regardless of GC conditions? If they're very large polymers, they might show up on HPLC. If they're huger, on the order of biopolymer sized, they may show up on a size-exclusion column, otherwise, a standard reverse phase column would be good for a large polymer. I worry about what wavelength you'll use, do you see a possible UV absorbing ability in your molecule.