About the uncertainty: the size of an orbital (I say: of an electron) results from the electron's kinetic energy. The orbital's size is just a position uncertainty or delocalization. Heisenberg's limit is attained by Gaussian wavefunctions; being no Gaussian functions, orbitals don't attain this limit, but are not far from it.
As a consequence and as you pointed out, an electron with the same kinetic energy as the trapped one could not measure a position more accurately than to one orbital (or atom size). Better accuracy needs a heavier particle or a more energetic electron.
Beware, though, that Heisenberg's uncertainty applies to one measure only. If you measure over many events, the statistics reduces the uncertainty, so you get a better observation. Take a telephone modem for instance: when the signal is clean (=many particles) it can transmit 56kb/s over only 3100Hz bandwidth, which violates Heisenberg's energy-time uncertainty telling that it takes 1/2pi seconds to distinguish two signals spaced by 1Hz. That would have been with a bad signal-to-noise (=one single particle).
Now, take a scanning electron microscope. They see individual atoms presently, but imagine a better one in the future, with a resolution better than one atom. It sends electrons with 100keV or 1MeV (not 10eV as the kinetic energy in a hydrogen atom) to the atoms in a solid target. A magnetic lens focusses each electron to such a small area.
Thanks to the higher energy, the probing electron can be smaller than the target one. Sometimes they interact, what we observe at the detector because the sensing electron was deflected. This happens only if both electrons were near enough to an other because the energetic electron needs much force to deviate, hi Heisenberg. Then we can say "this time the wavefunction of the target electron reduced its volume to that little around the rather well known position of the sensing electron" and for instance the target electron has been ejected from a position more accurate than an atom's volume.
Over many sensing electrons and target electrons (replenished by conduction at the solid target) we can reconstruct a probability for the target electron to concentrate around any position: a |psi|2.
The interesting part of the idea of a particle is that some electron's properties like the charge are kept as integer numbers when the wave (I say the electron) changes its size and shape in an interaction.
The less useful and potentially misleading part in the particle concept would be to say "electrons are points" or "possible positions" because we have no means to observe an electron as a point.
Electrons are points in the limited sense that at any energy (TeV) accessible to humans, they still behave like elementary particles, and if they concentrate to the corresponding volume, they keep their usual attributes unsplit. An other argument is that electrons' Landé factor hints to an elementary particle.
And it remains that, whether you imagine electrons as diffuse or not, in Schrödinger's equation you need q2/d from the distance to the nucleus, but you need no q2/d where d would be the distance between varied positions in the electron's shape and q a charge density around these positions. So some mystery remains.