They cannot be treated separately.
If they can't why you did so? Your "stoichiometric equation"
0.45CO + 0.55H2 + (0.45 + 1.1/4 - 0.45/2) (O2+3.76N2) = 0.45CO2 + 1.1/2H2O +3.76 (0.45 + 1.1/4-0.45/2)N2
is in fact a sum of two separate equations, each describing the burning of the CO and H
2 respectively:
0.45CO + 0.45/2 (O2+3.76N2) = 0.45CO2 +3.76 (0.45/2)N2
0.55H2 + (1.1/4) (O2+3.76N2) = 1.1/2H2O +3.76 (1.1/4)N2
And that's exactly what I suggested.